Sunday, 29 January 2017

Estimating time since death using necrobiome


A team led by Dr. Nathan H. Lents of the John Jay College of Criminal Justice, City University of New York (CUNY), sampled bacteria from the ear and nasal canals of 21 cadavers through several weeks of decomposition. They then analyzed the bacterial samples using Next-Generation metagenomic DNA sequencing to determine the identity and abundance of all microbes present. With this very large data set, the researchers used a machine learning approach to scrutinize the bacterial communities and how they change over time as the bodies decomposed. Through iterative testing and tweaking of their computational tools, the investigators built a statistical model that predicts the postmortem interval of unknown samples to within 55 accumulated degree-days, or about two days in summertime. This degree of accuracy holds through several weeks of decomposition, a substantial improvement over presently available methods.

"Our approach had the benefit of sampling the same cadavers repeatedly as they decomposed and we think that this really added to the ability of our machine learning approach to see through all of the massive amount of noisy data and detect the underlying patterns," said Dr. Lents. "While we consider this a pilot study, it is a very promising proof-of-concept, and I think that microbiome-based approaches will eventually become the standard method of determining the time since death for bodies that are discovered after some time of decomposition."

"This study takes us a step further [than the human microbiome], and tells us about the necrobiome, the collection of microbes on a dead body," said Dr. Robert DeSalle, Curator of Molecular Systematics at the American Museum of Natural History, who was not affiliated with the CUNY study. "By knowing which microbes take over a dead body and how long it takes, forensic scientists might be able to use this technique to determine time of death or other aspects of a crime scene."

With additional research, this microbiome-based method promises a far more definitive method to establish time since death, which could open and close avenues of investigation in homicide cases, shed light upon possible suspects, and corroborate or disprove alibis.

See:

Hunter R. Johnson et al. A Machine Learning Approach for Using the Postmortem Skin Microbiome to Estimate the Postmortem Interval. PLOS ONE, December 2016 DOI: 10.1371/journal.pone.0167370



Posted by Dr. Tim Sandle

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